What's New!

A never version of the pipeline is now up at the repository. This version helps with OS X compatibility and provides a workaround for a newly discovered bug in FreeBayes.... [Read More]

The current version of VCFtools has removed some key filtering options. I recommend installing version 1.11 (LINK). [Read More]

After months of brooding over code and results, I’m releasing a new version of the dDocent pipeline (dDocent.FB). dDocent.FB removes almost all BAM processing steps and now uses FreeBayes to... [Read More]

Today marks the first official BETA release of dDocent. A very basic User Guide is now online and will be constantly updated. Scripts are updated on the GitHub repository page.... [Read More]